MRIQC: individual T1w report

Summary

  • BIDS filename: sub-6030_ses-2_T1w.
  • Date and time: 2023-08-10, 16:19.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.3513896027961165
cnr3.7886358442520445
efc0.4951876021591203
fber3564.2597650546936
fwhmavg3.4006966666666667
fwhmx3.31741
fwhmy3.64389
fwhmz3.24079
icvscsf0.19398981051395767
icvsgm0.45128578676416586
icvswm0.35472440272187644
inumed1.4227741956710815
inurange0.3583299219608307
qi12.7454854876306346e-05
qi20.008208199130605817
rpvecsf29.514900090241074
rpvegm14.007300258525175
rpvewm21.05705112191968
sizex176
sizey256
sizez256
snrcsf2.6239395716026515
snrgm9.268639435998788
snrtotal9.629760708054397
snrwm16.99670311656175
snrdcsf36.13969810963416
snrdgm80.0502203892176
snrdtotal79.70723519027318
snrdwm122.9317870719678
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk15.386517617872244
summarybgmad5.329267543696887
summarybgmean12.449319101870525
summarybgmedian10.73225848376751
summarybgn2404530.0
summarybgp053.5945363342761993
summarybgp9528.499538078904152
summarybgstdv8.938506277667546
summarycsfk0.421494812516364
summarycsfmad126.4178393758383
summarycsfmean305.06276863412216
summarycsfmedian293.981721624732
summarycsfn8190.0
summarycsfp05141.7736480757594
summarycsfp95491.7608133144676
summarycsfstdv112.03145707172185
summarygmk0.11851010284507124
summarygmmad68.89981610065261
summarygmmean650.2521910132298
summarygmmedian651.175932213664
summarygmn23590.0
summarygmp05533.1210888922215
summarygmp95763.6849194765091
summarygmstdv70.2543382570023
summarywmk0.7761884992952237
summarywmmad53.67333740437579
summarywmmean1000.0381643304149
summarywmmedian1000.0000081956387
summarywmn160095.0
summarywmp05903.2556302845478
summarywmp951095.8868324384086
summarywmstdv58.83475625756486
tpmoverlapcsf0.17590297758579254
tpmoverlapgm0.45886003971099854
tpmoverlapwm0.5099057555198669
wm2max0.4434374715365698
AcquisitionDuration318.42
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime14:39:26.912500
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHeadNeck_64
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime6.1e-06
EchoTime0.0024
FlipAngle9
ImageCommentsProject:earlypsychosis
ImageOrientationPatientDICOM[-0.0103566, 0.957755, 0.287399, 0.0213349, 0.28756, -0.957525]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NONE']
ImageTypeText['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.262
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InversionTime0.9
MRAcquisitionType3D
MTStateTrue
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
ParallelAcquisitionTechniqueGRAPPA
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseResolution1
PixelBandwidth320
ProtocolNameMPRAGE_SAG_1mm_iPAT2
PulseSequenceDetails%SiemensSeq%\tfl
PulseSequenceName*tfl3d1_16ns
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE24
RepetitionTime2.3
ScanOptionsIR
ScanningSequenceGR\IR
SequenceVariantSK\SP\MP
SeriesDescriptionMPRAGE_SAG_1mm_iPAT2
SeriesNumber10
ShimSetting[2630, 5293, -7447, 51, -6, -708, -51, -250]
SliceThickness1
SoftwareVersionssyngo MR XA30
StationNameMRC35427
TxRefAmp216.183
md5sum6507755c856a1f659102a4b570c89bc6
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.